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1

Processing strategies and software solutions for data-independent acquisition in mass spectrometry

Bilbao, Aivett, Varesio, Emmanuel, Luban, Jeremy, Strambio-De-Castillia, Caterina, Hopfgartner, Gérard, Müller, Markus, Lisacek, Frédérique

Journal:

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

2

The use of variable Q1 isolation windows improves selectivity in LC-SWATH-MS acquisition

Zhang, Ying, Bilbao, Aivett, Bruderer, Tobias, Luban, Jeremy, Strambio-De-Castillia, Caterina, Lisacek, Frédérique, Hopfgartner, Gérard, Varesio, Emmanuel

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.93 MB

english, 2015

3

Optimization by infusion of multiple reaction monitoring transitions for sensitive quantification of peptides by liquid chromatography/mass spectrometry

Alghanem, Bandar, Nikitin, Frédéric, Stricker, Thomas, Duchoslav, Eva, Luban, Jeremy, Strambio-De-Castillia, Caterina, Muller, Markus, Lisacek, Frédérique, Varesio, Emmanuel, Hopfgartner, Gérard

Journal:

Rapid Communications in Mass Spectrometry

Year:

2017

Language:

english

File:

PDF, 830 KB

english, 2017

4

Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon

Donnard, Elisa, Vangala, Pranitha, Afik, Shaked, McCauley, Sean, Nowosielska, Anetta, Kucukural, Alper, Tabak, Barbara, Zhu, Xiaopeng, Diehl, William, McDonel, Patrick, Yosef, Nir, Luban, Jeremy, Garb

Journal:

Year:

2018

Language:

english

File:

PDF, 10.58 MB

english, 2018

5

The yeast two-hybrid system for studying protein—protein interactions

Jeremy Luban, Stephen P Goff

Journal:

Current Opinion in Biotechnology

Year:

1995

Language:

english

File:

PDF, 650 KB

english, 1995

6

Vpx rescues HIV-1 transduction of dendritic cells from the antiviral state established by type 1 interferon

Thomas Pertel, Christian Reinhard, Jeremy Luban

Journal:

Year:

2011

Language:

english

File:

PDF, 788 KB

english, 2011

7

Inhibition of HIV-1 infection by TNPO3 depletion is determined by capsid and detectable after viral cDNA enters the nucleus

Alberto De Iaco, Jeremy Luban

Journal:

Year:

2011

Language:

english

File:

PDF, 913 KB

english, 2011

8

The retroviral restriction factor TRIM5α

Sarah Sebastian, Jeremy Luban

Journal:

Current Infectious Disease Reports

Year:

2007

Language:

english

File:

PDF, 168 KB

english, 2007

9

Evidence-based practice guidelines for plasma transfusion

John D. Roback, Stephen Caldwell, Jeff Carson, Robertson Davenport, Mary Jo Drew, Anne Eder, Mark Fung, Marilyn Hamilton, John R. Hess, Naomi Luban, Jeremy G. Perkins, Bruce S. Sachais, Aryeh Shander,

Journal:

Transfusion (Wiley)

Year:

2010

Language:

english

File:

PDF, 796 KB

english, 2010

10

Specific incorporation of cyclophilin A into HIV-1 virions

Franke, Ettaly Kara, Yuan, Hannah En Hui, Luban, Jeremy

Journal:

Year:

1994

File:

PDF, 629 KB

1994

11

Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1

Sayah, David M., Sokolskaja, Elena, Berthoux, Lionel, Luban, Jeremy

Journal:

Year:

2004

Language:

english

File:

PDF, 494 KB

english, 2004

12

10.1038/nm1201-1278

Journal:

Nature Medicine

Year:

2001

Language:

english

File:

PDF, 215 KB

english, 2001

13

Cyclophilin A modulates the sensitivity of HIV-1 to host restriction factors

Towers, Greg J, Hatziioannou, Theodora, Cowan, Simone, Goff, Stephen P, Luban, Jeremy, Bieniasz, Paul D

Journal:

Nature Medicine

Year:

2003

Language:

english

File:

PDF, 439 KB

english, 2003

14

AIF and cyclophilin A cooperate in apoptosis-associated chromatinolysis

Candé, Céline, Vahsen, Nicola, Kouranti, Ilektra, Schmitt, Elise, Daugas, Eric, Spahr, Chris, Luban, Jeremy, Kroemer, Romano T, Giordanetto, Fabrizio, Garrido, Carmen

Journal:

Year:

2004

Language:

english

File:

PDF, 341 KB

english, 2004

15

Cyclophilin A regulates HIV-1 infectivity, as demonstrated by gene targeting in human T cells

Braaten, Douglas, Luban, Jeremy

Journal:

The EMBO Journal

Year:

2001

Language:

english

File:

PDF, 278 KB

english, 2001

16

Lentiviral Vector Gene Transfer Is Limited by the Proteasome at Postentry Steps in Various Types of Stem Cells

Francesca Romana Santoni de Sio, Angela Gritti, Paolo Cascio, Margherita Neri, Maurilio Sampaolesi, Cesare Galli, Jeremy Luban, Luigi Naldini

Journal:

Year:

2008

Language:

english

File:

PDF, 1.26 MB

english, 2008

17

Inhibition of HIV-1 Replication by Cyclosporine A or Related Compounds Correlates with the Ability to Disrupt the Gag–Cyclophilin A Interaction

Ettaly Kara Franke, Jeremy Luban

Journal:

Year:

1996

Language:

english

File:

PDF, 220 KB

english, 1996

18

HIV-1 Infection: Going Nuclear with TNPO3/Transportin-SR2 and Integrase

Journal:

Current Biology

Year:

2008

Language:

english

File:

PDF, 152 KB

english, 2008

19

The role of lysine 186 in HIV-1 integrase multimerization

Lionel Berthoux, Sarah Sebastian, Mark A. Muesing, Jeremy Luban

Journal:

Year:

2007

Language:

english

File:

PDF, 1.58 MB

english, 2007

20

Human cellular restriction factors that target HIV-1 replication

Klaus Strebel, Jeremy Luban, Kuan-Teh Jeang

Journal:

Year:

2009

Language:

english

File:

PDF, 2.10 MB

english, 2009

21

TRIM5α associates with proteasomal subunits in cells while in complex with HIV-1 virions

Zana Lukic, Stéphane Hausmann, Sarah Sebastian, Justin Rucci, Jaya Sastri, Seth L Robia, Jeremy Luban, Edward M Campbell

Journal:

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

22

Isolation, Characterization and Targeted Disruption of Mouse Ppia: Cyclophilin A Is Not Essential for Mammalian Cell Viability

John Colgan, Mohammed Asmal, Jeremy Luban

Journal:

Year:

2000

Language:

english

File:

PDF, 273 KB

english, 2000

23

TRIM5 structure, HIV-1 capsid recognition, and innate immune signaling

Markus G Grütter, Jeremy Luban

Journal:

Current Opinion in Virology

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

24

Cyclophilin A Regulates TCR Signal Strength in CD4+ T Cells via a Proline-Directed Conformational Switch in Itk

John Colgan, Mohammed Asmal, Martha Neagu, Bin Yu, Jason Schneidkraut, Youngnam Lee, Elena Sokolskaja, Amy Andreotti, Jeremy Luban

Journal:

Year:

2004

Language:

english

File:

PDF, 876 KB

english, 2004

25

Cyclophilin, TRIM5, and innate immunity to HIV-1

Elena Sokolskaja, Jeremy Luban

Journal:

Current Opinion in Microbiology

Year:

2006

Language:

english

File:

PDF, 119 KB

english, 2006

26

Absconding with the Chaperone: Essential Cyclophilin–Gag Interaction in HIV-1 Virions

Journal:

Year:

1996

Language:

english

File:

PDF, 408 KB

english, 1996

27

Production of Ribosome Components in Effector CD4+ T Cells Is Accelerated by TCR Stimulation and Coordinated by ERK-MAPK

Mohammed Asmal, John Colgan, Felix Naef, Bin Yu, Youngnam Lee, Marcelo Magnasco, Jeremy Luban

Journal:

Year:

2003

Language:

english

File:

PDF, 691 KB

english, 2003

28

Innate Immune Sensing of HIV-1 by Dendritic Cells

Journal:

Cell Host & Microbe

Year:

2012

Language:

english

File:

PDF, 680 KB

english, 2012

29

Human immunodeficiency virus type 1 Gag protein binds to cyclophilins A and B

Jeremy Luban, Karen Leigh Bossolt, Ettaly K. Franke, Ganjam V. Kalpana, Stephen P. Goff

Journal:

Year:

1993

Language:

english

File:

PDF, 1.88 MB

english, 1993

30

The retinoblastoma protein and BRG1 form a complex and cooperate to induce cell cycle arrest

Joshua L. Dunaief, Bruce E. Strober, Sushovan Guha, Paul A. Khavari, Kimona Ålin, Jeremy Luban, Martin Begemann, Gerald R. Crabtree, Stephen P. Goff

Journal:

Year:

1994

Language:

english

File:

PDF, 2.56 MB

english, 1994

31

TRIM5α selectively binds a restriction-sensitive retroviral capsid

Sarah Sebastian, Jeremy Luban

Journal:

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

32

HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency

Federico A Santoni, Jessica Guerra, Jeremy Luban

Journal:

Year:

2012

Language:

english

File:

PDF, 1.43 MB

english, 2012

33

Vpx rescue of HIV-1 from the antiviral state in mature dendritic cells is independent of the intracellular deoxynucleotide concentration

Reinhard, Christian, Bottinelli, Dario, Kim, Baek, Luban, Jeremy

Journal:

Year:

2014

Language:

english

File:

PDF, 685 KB

english, 2014

34

Cyclophilin A promotes HIV-1 reverse transcription but its effect on transduction correlates best with its effect on nuclear entry of viral cDNA

De Iaco, Alberto, Luban, Jeremy

Journal:

Year:

2014

Language:

english

File:

PDF, 4.24 MB

english, 2014

35

Lv4, an activity that restricts nuclear entry of SIVMAC/SIVSMin human blood cells

Pizzato, Massimo, Neagu, Martha, Pertel, Thomas, Firrito, Claudia, Ziglio, Serena, Zufferey, Madeleine, Berthoux, Lionel, Luban, Jeremy

Journal:

Year:

2013

Language:

english

File:

PDF, 78 KB

english, 2013

36

HIV-1 uncoating in human CD4+T cells: kinetic and functional analyses

Chen, Nan-Yu, Zhou, Lihong, Gane, Paul G, Price, Amanda, Zufferey, Madeleine, Luban, Jeremy, James, Leo, Selwood, David, Fassati, Ariberto

Journal:

Year:

2013

Language:

english

File:

PDF, 66 KB

english, 2013

37

Identifying features of the lentiviral genome crucial for the establishment of latency

Serena Ziglio,Giada Mattiuzzo,Jeremy Luban,Massimo Pizzato

Journal:

Year:

2013

Language:

english

File:

PDF, 66 KB

english, 2013

38

Vpx rescue of HIV-1 from the antiviral state is independent of the intracellular nucleotide concentration

Reinhard, Christian, Botinelli, Dario, Kim, Baek, Luban, Jeremy

Journal:

Year:

2013

Language:

english

File:

PDF, 70 KB

english, 2013

39

Sequence Note : The HIV Type 1 Replication Block in Nonhuman Primates Is Not Explained by Differences in Cyclophilin A Primary Structure

YIN, LEI, BOUSSARD, SUZANNE, ALLAN, JONATHAN, LUBAN, JEREMY

Journal:

AIDS Research and Human Retroviruses

Year:

1998

Language:

english

File:

PDF, 374 KB

english, 1998

40

Gammaretroviralpolsequences actin cisto direct polysome loading and NXF1/NXT-dependent protein production bygag-encoded RNA

Bartels, Hanni, Luban, Jeremy

Journal:

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

41

TRIM5 and the Regulation of HIV-1 Infectivity

Journal:

Molecular Biology International

Year:

2012

Language:

english

File:

PDF, 684 KB

english, 2012

42

Global Rescue of Defects in HIV-1 Envelope Glycoprotein Incorporation: Implications for Matrix Structure

Tedbury, Philip R., Ablan, Sherimay D., Freed, Eric O., Luban, Jeremy

Journal:

Year:

2013

Language:

english

File:

PDF, 1.82 MB

english, 2013

43

Extreme Genetic Fragility of the HIV-1 Capsid

Rihn, Suzannah J., Wilson, Sam J., Loman, Nick J., Alim, Mudathir, Bakker, Saskia E., Bhella, David, Gifford, Robert J., Rixon, Frazer J., Bieniasz, Paul D., Luban, Jeremy

Journal:

Year:

2013

Language:

english

File:

PDF, 10.97 MB

english, 2013

44

Activation of HIV-1 from Latent Infection via Synergy of RUNX1 Inhibitor Ro5-3335 and SAHA

Klase, Zachary, Yedavalli, Venkat S. R. K., Houzet, Laurent, Perkins, Molly, Maldarelli, Frank, Brenchley, Jason, Strebel, Klaus, Liu, Paul, Jeang, Kuan-Teh, Luban, Jeremy

Journal:

Year:

2014

Language:

english

File:

PDF, 3.12 MB

english, 2014

45

Deciphering the Code for Retroviral Integration Target Site Selection

Santoni, Federico Andrea, Hartley, Oliver, Luban, Jeremy, Kosakovsky Pond, Sergei L.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 2.82 MB

english, 2010

46

BCA2/Rabring7 Promotes Tetherin-Dependent HIV-1 Restriction

Miyakawa, Kei, Ryo, Akihide, Murakami, Tsutomu, Ohba, Kenji, Yamaoka, Shoji, Fukuda, Mitsunori, Guatelli, John, Yamamoto, Naoki, Luban, Jeremy

Journal:

Year:

2009

Language:

english

File:

PDF, 898 KB

english, 2009

47

Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals

Pickering, Suzanne, Hué, Stephane, Kim, Eun-Young, Reddy, Susheel, Wolinsky, Steven M., Neil, Stuart J. D., Luban, Jeremy

Journal:

Year:

2014

Language:

english

File:

PDF, 2.88 MB

english, 2014

48

HTLV-1 bZIP Factor Induces Inflammation through Labile Foxp3 Expression

Yamamoto-Taguchi, Nanae, Satou, Yorifumi, Miyazato, Paola, Ohshima, Koichi, Nakagawa, Masanori, Katagiri, Koko, Kinashi, Tatsuo, Matsuoka, Masao, Luban, Jeremy

Journal:

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

49

Transcriptional Profiling in Pathogenic and Non-Pathogenic SIV Infections Reveals Significant Distinctions in Kinetics and Tissue Compartmentalization

Lederer, Sharon, Favre, David, Walters, Kathie-Anne, Proll, Sean, Kanwar, Bittoo, Kasakow, Zeljka, Baskin, Carole R., Palermo, Robert, McCune, Joseph M., Katze, Michael G., Luban, Jeremy

Journal:

Year:

2009

Language:

english

File:

PDF, 1009 KB

english, 2009

50

Likely Role of APOBEC3G-Mediated G-to-A Mutations in HIV-1 Evolution and Drug Resistance

Jern, Patric, Russell, Rebecca A., Pathak, Vinay K., Coffin, John M., Luban, Jeremy

Journal:

Year:

2009

Language:

english

File:

PDF, 928 KB

english, 2009